Location: EU Supported » PASCAL - Pattern Analysis, Statistical Modelling and Computational Learning » Machine Learning in Systems Biology

event thumbnail image

Machine Learning in Systems Biology

Identification of functional modules based on transcriptional regulation structure

author:Etienne Birmelé, IBISC laboratory, Université Evry Val d'Essonne
published: Nov. 20, 2007, recorded: September 2007, views: 58

Turn off the lights

You might be experiencing some problems with Your Video player.

Slides

Slides
0:00	Identification of functional modules based on transcriptional regulation structure
1:01	Introduction
3:02	Outline
3:11	Learning the regulation structure
3:14	General overview
4:18	Regulation model
7:20	Licorn Step 1: Frequent co-regulator sets
8:03	General overview
8:37	Licorn Step 1: Frequent co-regulator sets
10:21	Regulation model
10:44	Licorn Step 2: best putative GRN’s
11:23	Regulation model
11:39	Licorn Step 3 - Statistical significance
12:16	Summary of the regulation structure learning step
12:55	Clustering
13:07	The three steps to detect modules
13:49	The similarity measure
16:03	The clustering algorithm
16:55	The similarity measure
17:19	The score of a clustering - 1
18:17	The score of a clustering - 2
18:46	Summary of the clustering step
19:10	Application to Yeast
19:12	The data set
20:01	Mapping to GO terms - 1
20:32	Mapping to GO terms - 2
21:33	Perspectives
22:54	- Questions

Related content

Visitors who watched this lecture also watched...

Gene-based bin analysis of genome-wide association studies
107 views - Nicolas Omont, 2007

Supervised reconstruction of biological networks
311 views - Jean-Philippe Vert, 2007

Mixture model of regressions for ChIP-chip experiment analysis
91 views - Tristan Mary-Huard, 2007

Welcome
99 views - Florence d'Alché, 2007

Integration of genome-wide data to infer genetic networks
149 views - Xavier Gidrol, 2007

Discovering Common Sequence Variation in Arabidopsis thaliana
164 views - Gunnar Rätsch, 2007

Artificial Regulatory Networks Evolution
82 views - Yolanda Sanchez-Dehesa, 2007

Machine Learning, Probability and Graphical Models
18399 views - Sam Roweis, 2006

Identification of overlapping biclusters using probabilistic relational models
79 views - Hui Zhao, 2007

Towards a semi-automatic functional annotation tool based on decision tree techniques
80 views - Jean-François Gibrat, 2007

Report a problem or upload files

If you have found a problem with this lecture or would like to send us extra material, articles, exercises, etc., please use our ticket system to describe your request and upload the data.
Enter your e-mail into the 'Cc' field, and we will keep you updated with your request's status.

Lecture popularity: You need to login to cast your vote.

See Also:

Download slides icon Download slides: mlsb07_birmele_ifm.pdf (266.2 KB)

Launch Windows Media Player Launch in a standalone WM Player

WMedia Player Switch to Windows Media Player

Help icon Streaming Video Help

WebLink icon Windows Media Player Firefox Plugin - Download

Link this page

Would you like to put a link to this lecture on your homepage?
Go ahead! Copy the HTML snippet !

Write your own review or comment:

Comment
Name
Email address
URL

make sure you have javascript enabled or clear this field: