ProbLog and its Application to Link Mining in Biological Networks
Description
ProbLog is a recently introduced probabilistic extension of Prolog [De Raedt, Kimmig, Toivonen, IJCAI 07]. A ProbLog program defines a distribution over logic programs by specifying for each clause the probability that it belongs to a randomly sampled program, and these probabilities are mutually independent. The semantics of ProbLog is then defined by the success probability of a query in a randomly sampled program. It has been applied to link mining and discovery in a large biological network. In the talk, I will also discuss various learning settings for ProbLog and link mining, in particular, I shall present techniques for probabilistic local pattern mining, probabilistic explanation based learning [Kimmig, De Raedt, Toivonen, ECML 07] and theory compression from examples [De Raedt et al, ILP 96].
This is joint work with Angelika Kimmig, Hannu Toivonen, Kate Revoredo and Kristian Kersting.
| Slides | |
| 0:00 | ProbLog: A Probabilistic Prolog and Its Applications to Link |
| 0:33 | Overview - part 1 |
| 1:09 | Overview - part 2 |
| 2:06 | Motivation |
| 2:09 | Daughter in Florence |
| 3:07 | A model |
| 4:36 | Questions to ask |
| 7:08 | Biological Motivation |
| 7:56 | Database Information |
| 9:45 | Subgraph Extracted |
| 10:20 | Questions to ask |
| 11:47 | ProbLog: Semantics and Inference |
| 12:09 | ProbLog Programs |
| 13:35 | In ProbLog |
| 14:12 | Semantics ProbLog |
| 16:10 | ProbLog Evaluation |
| 18:13 | SLD-tree |
| 18:27 | ProbLog Evaluation |
| 19:23 | Disjoint Sum |
| 20:09 | Exact Inference |
| 21:50 | Binary Decision Diagrams |
| 23:42 | Probability BDD |
| 24:18 | Approximative Inference |
| 24:41 | Monte Carlo |
| 25:38 | Bounded Inference |
| 26:24 | ProbLog Evaluation |
| 27:50 | Bounded Inference |
| 28:25 | Bounds |
| 28:43 | Experimental data |
| 29:55 | Some results |
| 30:49 | Scalability |
| 32:01 | Current trends |
| 33:40 | Inference |
| 35:04 | Probabilistic EBL |
| 35:08 | Explanation-Based Learning |
| 36:22 | EBL |
| 36:58 | The CUP example |
| 37:15 | The CUP Example (2) |
| 37:31 | The CUP example |
| 38:41 | Most Likely Proof - part 1 |
| 39:49 | Most Likely Proof - part 2 |
| 40:36 | The CUP example |
| 41:02 | PEBL |
| 41:52 | Obtained explanations |
| 41:52 | Example EBL |
| 42:45 | PEBL Issues |
| 43:12 | Similarity-based EBL |
| 44:31 | PEBL Issues |
| 45:35 | Experiments - part 1 |
| 45:52 | Experiments - part 2 |
| 47:40 | Experiments - part 1 |
| 49:14 | Similarity-based EBL |
| 49:17 | PEBL Issues |
| 49:23 | Obtained explanations |
| 49:35 | Experiments - part 1 |
| 49:37 | Experiments - part 2 |
| 49:39 | Results |
| 50:50 | Experiments - part 2 |
| 51:05 | Results |
| 52:27 | Common explanations |
| 53:27 | PEBL: conclusions |
| 54:28 | Compression |
| 54:35 | Map for Daughter |
| 54:47 | Biology |
| 55:22 | Example |
| 55:36 | Revision |
| 55:59 | Revision |
| 56:50 | Experiment |
| 56:53 | Experiments |
| 56:55 | Compression |
| 57:04 | Conclusions |
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