Parameter estimation using moment-closure methods
Description
This poster will give tackle one of the key problems in the new science of systems biology:
inference for the rate parameters underlying complex stochastic kinetic biochemical
network models, using partial, discrete, and noisy time-course measurements of the system
state. Although inference for exact stochastic models is possible, it is computionally intensive for relatively small networks.
We explore Bayesian estimation of stochastic kinetic rate parameters using approximate
models, based on moment closure analysis of the underlying stochastic process. By assuming
a Gaussian distribution and using moment-closure estimates of the first two-moments, we
can greatly increase the speed of parameter inference. The parameter space can be efficiently
explored by embedding this approximation into an MCMC procedure.
| Slides | |
| 0:00 | Parameter estimation using moment closure methods |
| 0:00 | Modelling - 1 |
| 0:43 | Modelling - 2 |
| 1:07 | Modelling - 3 |
| 1:13 | Modelling - 4 |
| 1:29 | Modelling - 5 |
| 1:44 | Simulation techniques |
| 4:10 | Moment equations - 1 |
| 5:02 | Moment equations - 2 |
| 5:42 | Moment equations - 3 |
| 6:16 | Moment closure - 1 |
| 7:06 | Moment closure - 2 |
| 7:55 | Moment closure - 3 |
| 8:25 | Parameter inference - 1 |
| 8:55 | Parameter inference - 2 |
| 8:57 | Parameter inference - 3 |
| 9:17 | Parameter inference - 4 |
| 9:23 | Parameter inference - 5 |
| 9:54 | Parameter inference - 6 |
| 10:49 | Technicalities |
| 11:39 | Example 1: Immigration-death model |
| 12:18 | Example 1: Immigration-death model - Results |
| 12:55 | Example 2: Michaelis-Menten |
| 13:39 | Example 2: Michaelis-Menten inference - 1 |
| 14:14 | Example 2: Michaelis-Menten inference - 2 |
| 14:46 | Example 2: Michaelis-Menten QSSA inference |
| 15:11 | Example 3: Prokaryotic auto-regulatory gene network |
| 15:43 | Conclusions and future work |
| 17:18 | - Questions |
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