Genomic Repeat Visualisation Using Suffix Arrays

author:Nava Whiteford, University of Southampton
published: Feb. 25, 2007, recorded: November 2005, views: 77

Slides

Slides
0:00	Genomic Repeat Visualisation Using Suffix Arrays
0:33	Repeat Visualisation Using Suffix Arrays
1:03	The repeatscore plot1
1:19	The repeatscore plot2
1:22	The repeatscore plot3
1:24	The repeatscore plot4
1:24	The repeatscore plot5
1:25	The repeatscore plot6
1:25	The repeatscore plot7
1:25	The repeatscore plot8
1:26	The repeatscore plot9
1:27	The repeatscore plot10
1:38	The repeatscore plot11
1:45	The repeatscore plot12
1:56	The repeatscore plot13
2:22	The repeat-score plot14
2:35	The repeat-score plot15
3:00	Repeatscore plots of Artificial Sequences
3:28	Random Sequences
3:44	DNA Sequences
4:10	Small Genomic Sequences1
4:19	Small Genomic Sequences2
4:39	E.Coli1
4:55	E.Coli2
5:46	E.Coli3
6:20	E.Coli4
7:04	Repeats in Genomic Sequences
7:44	A Linear time algorithm
8:18	The suffix array1
8:53	The suffix array2
9:00	Generating the repeatscore plot1
9:07	Generating the repeatscore plot2
9:29	Whole human genome1
9:39	Whole human genome2
9:39	Whole human genome3
9:59	Human Chromosome 18
10:16	Arabidopsis thaliana chromosome 1, coding region
10:29	Fibonacci derived sequences
10:52	Gallus gallus chromosome 20
11:02	Application to other sequences
11:35	Shakespeare
12:31	Text document containing the text “The quick brown fox jumped over the lazy dog” 16times.
12:45	“On the Economy of Machinery and Manufacturers” by Charles Babbage with artificial repeat inserted 16times.1
12:55	“On the Economy of Machinery and Manufacturers” by Charles Babbage with artificial repeat inserted 16times.2
13:05	Conclusion

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