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Game theoretic models in molecular biology
Published on Feb 25, 20078206 Views
There are many challenges in computational modeling of biological processes. Few processes such as signaling pathways operate in- dependently of others but rather involve substantial coordination and
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Chapter list
Game theoretic models in molecular biology00:00
Abstraction, scale01:12
Abstractions cont’d02:23
Abstractions, predictions and data04:42
Our approach - game theory06:25
Some background06:39
Our approach - game theory08:50
Example - protein-DNA binding pt 109:10
Example - protein-DNA binding pt 209:59
Example - protein-DNA binding pt 310:55
Example - protein-DNA binding pt 411:09
DNA-binding - formulation11:32
Transport12:32
Local binding14:06
Allocation to sites or regions15:18
Mapping to game theory16:22
DNA-binding game - strategies18:36
DNA-binding game - utilities pt 119:37
DNA-binding game - utilities pt 220:52
The binding game21:33
Understanding the binding game pt 122:20
Understanding the binding game pt 223:25
DNA binding game - equilibria pt 124:42
DNA binding game - equilibria pt 224:57
DNA binding game - computation pt 125:15
DNA binding game - computation pt 225:33
DNA binding game - computation pt 325:53