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Deep siamese neural network for prediction of long-range interactions in chromatin
Published on Aug 23, 20163017 Views
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Chapter list
Deep siamese neural network for prediction of long-range interactions in chromatin00:00
Biological problem/100:14
Biological problem/200:29
Biological problem/300:35
Biological problem/400:40
Tech problem01:49
Biological problem/502:35
Algorithm problem03:15
Thurman 2012 algorithm/103:29
Thurman 2012 algorithm/204:07
Our idea04:48
Data reading and setting up/104:50
Data reading and setting up/205:01
Data reading and setting up/306:04
Goal: couples of chromosome regions/106:39
Goal: couples of chromosome regions/206:49
Input interaction matrix with labels/106:59
Input interaction matrix with labels/207:22
Supervised approach: deep neural network07:58
Previous algorithms08:14
Supervised approach: deep siamese neural network/108:32
Supervised approach: deep siamese neural network/209:34
Supervised approach: deep siamese neural network/309:46
Supervised approach: deep siamese neural network/4 09:50
Optimization, training, validation, testing/110:52
Supervised approach: deep siamese neural network/611:24
Supervised approach: deep siamese neural network/511:34
Optimization, training, validation, testing/212:00
Training & validation12:13
Validation set results12:58
Future directions13:43
Future goal14:21
The end 14:42